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In /project/microbiome/data/seq/psomagen_6mar20/coligoISD, /project/microbiome/data/seq/psomagen_26may20/coligoISD, and /project/microbiome/data/seq/psomagen_29jan21novaseq1c/coligoISD, there are 16S and ITS directories for all projects. These contain a file named coligoISDtable.txt with counts of the coligos and the ISD found in the trimmed forward reads, per sample. I did not do the fanciness I did for the otutable generation with project renaming (see above)The file run_slurm_mkcoligoISDtable.pl has the code that passes over all of the projects and uses vsearch for making the table.