Content Comparison

mkdir -p /gscratch/buerkle/data/alfalfa/rawreads
cd /gscratch/buerkle/data/alfalfa/rawreads
split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq /project/evolgen/data/local/alfalfa/alf1GBS_NS1_mar21/Pool1_S1_L001_R1_001.fastq alf1_pool1_
split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq /project/evolgen/data/local/alfalfa/alf1GBS_NS1_mar21/Pool2_S2_L002_R1_001.fastq alf1_pool2_
split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq /project/evolgen/data/local/alfalfa/alf1GBS_NS1_mar21/Pool3_S1_L001_R1_001.fastq alf1_pool3_
split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq /project/evolgen/data/local/alfalfa/alf1GBS_NS1_mar21/Pool4_S2_L002_R1_001.fastq alf1_pool4_
/project/evolgen/assem/alf1GBS_NS1_mar21/demultiplex/run_parsebarcodes_onSplitInput.pl