/project/microbiome/data_queue/seq/LowReadLowReadII/rawdata
salloc --account=microbiome -t 0-0506:00
mkdir -p /gscratch/grandol1/LowReadLowReadII/rawdata
cd /gscratch/grandol1/LowReadLowReadII/rawdata
unpigz --to-stdout /project/microbiome/data_queue/seq/LowReadLowReadII/rawdata/Low-Read-PoolII_S1_L001_R1_001.fastq | split -l 1000000 -d --suffix-length=3 --additional-suffix=.fastq - LowReadLowReadII_R1_ ;
unpigz --to-stdout /project/microbiome/data_queue/seq/LowReadLowReadII/rawdata/Low-Read-PoolII_S1_L001_R2_001.fastq | split -l 1000000 -d --suffix-length=3 --additional-suffix=.fastq - LowReadLowReadII_R2_
//project/microbiome/data_queue/seq/LowReadLowReadII/rawdata/run_parse_count_onSplitInput.pl
cd /project/microbiome/data_queue/seq/LowReadLowReadII/rawdata
./run_splitFastq_fwd.sh
...
cd /project/microbiome/data_queue/seq/LowReadLowReadII/tfmergedreads
./run_slurm_mergereads.pl
...
cd /project/microbiome/data_queue/seq/LowReadLowReadII/otu
./run_slurm_mkotu.pl