Page Comparison

1st Attempt:

cat ./*_R1_001.fastq > 5RM1_R1.fastq

cat ./*_R2_001.fastq > 5RM1_R2.fastq

gzip 5RM1_R1.fastq

gzip 5RM1_R2.fastq

salloc --account=microbiome -t 0-05:00

mkdir -p /gscratch/grandol1/loc_ad2/rawdata

...

unpigz --to-stdout /project/microbiome/data_queue/seq/loc_ad2/rawdata/5RM1LocAd2_S1_L001_R1_001.fastq.gz | split -l 1000000 -d --suffix-length=3 --additional-suffix=.fastq - 5RM1loc_ad2_R1_ ;
unpigz --to-stdout /project/microbiome/data_queue/seq/loc_ad2/rawdata/5RM1LocAd2_S1_L001_R2_001.fastq.gz | split -l 1000000 -d --suffix-length=3 --additional-suffix=.fastq - 5RM1loc_ad2_R2_

//project/microbiome/data_queue/seq/loc_ad2/rawdata/run_parse_count_onSplitInput.pl

...