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run_splitFastq_fwd.sh and run_splitFastq_rev.sh run splitFastq_manyInputfiles.pl, which steps through the many pairs of files to split reads by sample and project, and place them in /project/gtl/data/raw/ALF1/16S/rawdata/sample_fastq/
Stopped here on 8-31-22
Calculate summary statistics on reads
In a sequence library’s rawdata/ directory (e.g., /project/gtl/data/raw/ALF1/ITS/rawdata/) I made run_aggregate.sh, to run aggregate_usearch_fastx_info.pl with a slurm job. Summaries are written to summary_sample_fastq.csv.
Stopped here on 8-31-22
Trim, merge and filter reads
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