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Following steps from https://github.com/zgompert/DimensionsExperiment.
Built bcftools version 1.16 and installed in
/project/evolgen/bin/
.bcftools
needed reference genome in bzip2 format, not gzip. So I now simply have an unzipped reference genome, which I have reindexed.Completed this step with something like:
sbatch --account=evolgen --time=01-0200:00 --nodes=1 --mem=120G --mail-type=ENDÂ 0_call_variants.sh
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