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  • Following steps from https://github.com/zgompert/DimensionsExperiment.

  • Built bcftools version 1.16 and installed in /project/evolgen/bin/.

  • bcftools needed reference genome in bzip2 format, not gzip. So I now simply have an unzipped reference genome, which I have reindexed.

  • Completed this step with something like: sbatch --account=evolgen --time=01-0200:00 --nodes=1 --mem=120G --mail-type=END  0_call_variants.sh

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