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This will avoid needless double processing while keeping everything together as typical
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mkdir -pcd /gscratch/grandol1/ReRun3/rawdata cd /gscratch/grandol1/ReRun3/rawdatarm * unpigz --to-stdout /project/microbiome/data_queue/seq/ReRun3/rawdata/ReRun3_ITS_S1_R1_001.fastq.gz | split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq - ReRun3_R1_ ; unpigz --to-stdout /project/microbiome/data_queue/seq/ReRun3/rawdata/ReRun3_ITS_S1_R2_001.fastq.gz | split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq - ReRun3_R2_ |
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