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If you’re not feeling git savvy but you want to, check out this fantastic free book: Happy Git and GitHub for the useR.
Schedule Outline
October
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From 1 - 4pm on Zoom
Using the multinomial and Dirichlet distributions to model count data
Assessing differences in microbial proportions
Overview of Josh’s paper and tutorial of the R package CNVRG
What you’ll need to be ready for October 6
The R packages installed
The code and presentations are available on Bitbucket (see above for downloading)
Recording of workshop from October 6:
Password: =akb28kL
October 8 - Analyzing count data with regression modeling
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The R packages installed
The code and presentations are available on Bitbucket (see above for downloading)
Recording of workshop from October
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8:
Password: gk$We4+?
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October 6 - Analyzing count data for differential abundances
From 1 to - 4pm on Zoom
Overview of raw reads, demultiplexing and splitting
For those in the EPSCoR Microbial Ecology Collaborative, please review /wiki/spaces/MICLAB/pages/559055211
DADA2 tutorial with Gordon CusterUsing the multinomial and Dirichlet distributions to model count data
Assessing differences in microbial proportions
Overview of Josh’s paper and tutorial of the R package CNVRG
What you’ll need to be ready for
...
Zoom
Be sure you have the R Packages installed
email me with any problems (wcalder@uwyo.edu)
Download the R project from Bitbucket here (it’s the same link as above in the course materials). It’s a big one (> 1Gb), but it will make the first day easier
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October 6
The R packages installed
The code and presentations are available on Bitbucket (see above for downloading)
Recording of workshop from October 6:
Password: arNJ+rw6=akb28kL
September 17 - Using the Bash shell with Teton
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Access to Teton
See the Word document below under Pre-workshop materials for a guide to log on from Linda van Diepen
Please attempt to logon to Teton before we start this section on Thursday
If you cannot logon because you do not have a project associated with Teton fill out the form for a new project on your advisor’s behalf. Or if there is a project but you are not a user on that project, request that you be added to the current project.
Zoom
Run this html file in a browser to follow along
September 15 - Bioinformatics with DADA2
From 1 to 4pm on Zoom
Overview of raw reads, demultiplexing and splitting
For those in the EPSCoR Microbial Ecology Collaborative, please review /wiki/spaces/MICLAB/pages/559055211
DADA2 tutorial with Gordon Custer
What you’ll need to be ready for Tuesday the 15th:
Zoom
Be sure you have the R Packages installed
email me with any problems (wcalder@uwyo.edu)
Download the R project from Bitbucket here (it’s the same link as above in the course materials). It’s a big one (> 1Gb), but it will make the first day easier
Recording from September 15:
Password: arNJ+rw6
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