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unpigz --to-stdout /project/microbiome/data_queue/seq/LowRead/rawdata/Low-Read-Pool_S1_L001_R1_001.fastq | split -l 1000000 -d --suffix-length=3 --additional-suffix=.fastq - LowRead_R1_ ;
unpigz --to-stdout /project/microbiome/data_queue/seq/TRNL1LowRead/rawdata/Low-Read-Pool_S1_L001_R2_001.fastq | split -l 1000000 -d --suffix-length=3 --additional-suffix=.fastq - LowRead_R2_

//project/microbiome/data_queue/seq/LowRead/rawdata/run_parse_count_onSplitInput.pl

cd /project/microbiome/data_queue/seq/LowRead/rawdata

./run_splitFastq_fwd.sh

./run_splitFastq_rev.sh

./run_aggregate.sh

cd /project/microbiome/data_queue/seq/LowRead/tfmergedreads

./run_slurm_mergereads.pl

cd /project/microbiome/data_queue/seq/LowRead/otu

./run_slurm_mkotu.pl