...
unpigz --to-stdout /project/gtl/data/raw/2AMF3AMF/rawdata/2AMF3AMF_S1_L001_R1_001.fqfastq.gz | split -l 1000000 10000000 -d --suffix-length=3 --additional-suffix=.fastq - 2AMF3AMF_R1_ ;
unpigz --to-stdout /project/gtl/data/raw/2AMF3AMF/rawdata/2AMF3AMF_S1_L001_R2_001.fqfastq.gz | split -l 1000000 10000000 -d --suffix-length=3 --additional-suffix=.fastq - 2AMF3AMF_R2_
//project/gtl/data/raw/2AMF3AMF/rawdata/run_parse_count_onSplitInput.plabove step running 12-30-22
cd /project/gtl/data/raw/2AMF3AMF/rawdata
./run_splitFastq_fwd.sh
./run_splitFastq_rev.sh./run_aggregate.sh
cd /project/gtl/data/raw/2AMF3AMF/tfmergedreads
./run_slurm_mergereads.pl
cd /project/gtl/data/raw/2AMF3AMF/otu
./run_slurm_mkotu.pl