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Sample names for the 2017 samples, which will be used for GBS and 16S/ITS, were provided in the Excel spreadsheet, by collaborators at the University of Tennessee. Populations were encoded with color! In March 2021, Alex Buerkle wrote a R script to read from the Excel sheet and encode population numbers in the sample ids.

...

Template info from Erin Bentley as Google Sheet, or attached here on as a text file.

As There will be additional samples beyond what is listed below (as of Alex is writing some code to clarify which samples (and how many) need 16S/ITS preps.). We expect on the order of 3647 samples for ITS and 16S preps and sequencing.

GBS only preps

GBS Plates

Plate Name

Samples

GBS Prep

Needed

GBS Prep

Completed

16S/ITS

Needed

16S/ITS

Completed

Complete

ALF_PLT1_2017_GBS

96

Y

Y

N

ALF_PLT2_2017_GBS

96

Y

Y

N

ALF_PLT3_2017_GBS

96

Y

Y

N

ALF_PLT4_2017_GBS

96

Y

Y

N

ALF_PLT5_2017_GBS

96

Y

Y

N

 

ALF_PLT6_2017_GBS

96

Y

Y

N

 

ALF_PLT7_2017_GBS

96

Y

Y

N

 

ALF_PLT8_2017_GBS

96

Y

Y

N

 

ALF_PLT9_2017_GBS

96

Y

Y

N

 

ALF_PLT10_2017_GBS

96

Y

Y

N

ALF_PLT11_2017_GBS

29

Y

ALF_PLT1_2020_GBS (GBS Only)

96

Y

N

ALF_

PLT1 

PLT2_2020_GBS (GBS Only)

96

Y

Y

N

ALF_PLT3_2020_GBS (GBS Only)

96

Y

ALF_

PLT2

PLT4_2020_GBS (GBS Only)

96

Y

Y

N

 

ALF_PLT5_2020_GBS (GBS Only)

96

Y

ALF_

PLT3

PLT6_2020_GBS (GBS Only)

96

Y

Y

N

 

ALF_PLT1_2020_END

96

Y

ALF_

PLT4

PLT2_2020_

GBS

END

96

Y

Y

N

 

ALF_PLT3_2020_END

96

Y

ALF_

PLT5

PLT4_2020_

GBS

END

96

Y

Y

N

 

ALF_PLT5_2020_END

96

Y

ALF_PLT6_2020_

GBS

END

96

Y

ALF_PLT7_2020_END

96

Y

N

ALF_

PLT1

PLT8_2020_END

96

Y

Y

Y

 

2333

 

16S/ITS preps

16S/ITS Plates

Plate Name

Samples

16S/ITS Completed

ALF_PLT1_2017_GBS

96

 

ALF_PLT2

_2020_END

_2017_GBS

96

 

ALF_PLT3_2017_GBS

96

 

ALF_PLT4_2017_GBS

96

 

ALF_PLT5_2017_GBS

96

 

ALF_PLT6_2017_GBS

96

Y

Y

Y

 

ALF_PLT7_2017_GBS

96

 

ALF_

PLT3

PLT8_

2020

2017_

ENDY

GBS

96

Y

Y

 

ALF_PLT9_2017_GBS

96

 

ALF_

PLT4

PLT10_

2020

2017_

ENDY

GBS

96

Y

Y

 

ALF_PLT11_2017_GBS

29

 

ALF_

PLT5

PLT1_2020_END

96

Y

Y

Y

 

ALF_PLT2_2020_END

96

 

ALF_

PLT6

PLT3_2020_END

96

Y

Y

Y

 

ALF_PLT4_2020_END

96

 

ALF_

PLT7

PLT5_2020_END

96

Y

Y

Y

 

ALF_PLT6_2020_END

96

 

ALF_

PLT8

PLT7_2020_END

96

Y

Y

Y

 

ALF_PLT8_2020_END

96

 

ALF_PLT1_2020_EPI

96

N

 

Y

ALF_PLT2_2020_EPI

96

N

Y

 

ALF_PLT3_2020_EPI

96

N

Y

 

ALF_PLT4_2020_EPI

96

N

Y

 

ALF_PLT5_2020_EPI

96

N

Y

 

ALF_PLT6_2020_EPI

96

N

Y

 

ALF_PLT7_2020_EPI

96

N

Y

 

ALF_PLT8_2020_EPI

96

N

 

 

Y

2525

3101