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Status (27 28 February 2021)

  • Alex Buerkle has processed the data to OTU table generation, including both merged and joined paired-end reads.

These are the informatics for the Bioinformatics iSeq100 Pilot1 library prep.

Demultiplexing and splitting

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In /project/microbiome/data/seq/gtl_tests/iSeq100Pilot1_brew_30nov20/otu, I ran run_slurm_mkotu.pl, which I modified to also pick up the joined reads (in addition the merged reads). On I reran this with a modification to correctly and unique label (assign names to) otus in the table that is used as a database for otutable generation. These jobs should be complete later on .