(July 14th, 2021) The tubes to be plated from the most recent TN shipment, are currently arranged in 96 position tube racks awaiting processing. They are arranged per the “TubesToBePlated” sheet of this workbook. We are still missing the 10 samples listed below.
Alex Buerkle used the complicated TN spreadsheet to create a list of tubes that need to be amplicon sequenced. Shannon Harris had already arranged the tubes they had sent and transcribed the hand written labels into a spreadsheet and added them to 96 tube racks. I attempted to reconcile the tobeplated list from Alex’s data manipulation with this using this r-script and these data. I was able to locate 293 of the tobeplated tubes and created a pull list. I found one transcription error. There are still 10 tubes I could not locate:
Site_101_Soil_3 |
Site_102_Soil_29 |
Site_102_Alf_Epi_7 |
Site_102_Trans_Epi_7 |
Site_111_Alf_Epi_10 |
Site_111_Trans_Epi_1 |
Site_127_Trans_Epi_9 |
Site_129_Alf_Epi_5 |
Site_129_Alf_Epi_25 |
Site_130_Alf_Epi_30 |
I tried to delve into the data to see if I could locate these 10 samples. I did not have any luck. I do not think it is a transcription error when I anti joined samplesInSites against our spreadsheet and then the spreadsheet against samplesInSites there was no easily discernible pattern. The list of sites between the 2 even disagreed. And, there were 212-228 disagreements.
Sites with Tube Samples Not Matching from TN spreadsheet | Sites with Tube Samples Not Matching from our spreadsheet |
|---|---|
101 | 101 |
102 | |
103 | |
104 | |
107 | |
108 | |
109 | |
110 | |
111 | |
116 | |
127 | |
128 | |
129 |
So, something is still fishy with the TN spreadsheet concerning tubes.