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mkdir -p /gscratch/grandol1/1TYM/rawdata cd /gscratch/grandol1/1TYM/rawdata unpigz --to-stdout /project/gtl/data/raw/1TYM/rawdata/1TYM_R1.fq.gz | split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq - 1TYM_R1_ ; unpigz --to-stdout /project/gtl/data/raw/1TYM/rawdata/1TYM_R2.fq.gz | split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq - 1TYM_R2_ |
making 17 67 R1 files and 17 67 R2 files, with structured names (e.g., for the R1 set):
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