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changes.mady.by.user Gregg Randolph

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Code Block
mkdir -p /gscratch/grandol1/1TYM/rawdata
cd /gscratch/grandol1/1TYM/rawdata
unpigz --to-stdout /project/gtl/data/raw/1TYM/rawdata/1TYM_R1.fq.gz | split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq - 1TYM_R1_ ;
unpigz --to-stdout /project/gtl/data/raw/1TYM/rawdata/1TYM_R2.fq.gz | split -l 16000000 -d --suffix-length=3 --additional-suffix=.fastq - 1TYM_R2_

making 17 67 R1 files and 17 67 R2 files, with structured names (e.g., for the R1 set):

/gscratch/grandol1/1TYM/rawdata/1TYM_R1_000.fastq
/gscratch/grandol1/1TYM/rawdata/1TYM_R1_001.fastq
etc.Stalled here on 1-18-2023

run_parse_count_onSplitInput.pl also writes to /gscratch.

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