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Plate

TRNL Primers

fullITS Primers

2TRNL11TYM1

TRNL19

fullITS05

TRNL20

fullITS06

2TRNL21TYM2

TRNL17

fullITS07

TRNL18

fullITS08

2TRNL31TYM3

TRNL21

fullITS09

TRNL22

fullITS10

2TRNL41TYM4

TRNL23

fullITS11

TRNL24

fullITS12

2TRNL51TYM5

TRNL16

fullITS02

Template Format:

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  • Equilibrate Beads to room Temperature

  • Add 15uL of ultra pure water to each well.

  • Add 24 ul of MagBeads to each well.

  • Pipette mix up and down 10 times.

  • Incubate at RT for 5 minutes

  • Secure plate on magnet plate; incubate at RT for 5 minutes (until wells are clear)

  • Remove 65 ul from each well; keep tips to left or right depending on the column to avoid bead pellet.

  • Add 100 ul Fresh 80% EtOH to each well. Incubate 30 seconds. Remove 100 ul from each well

  • Add 100 ul Fresh 80% EtOH to each well. Incubate 30 seconds. Remove 100 ul from each well

  • Reaspirate from each well to assure maximum EtOH removal

  • Allow plate to air dry for 7 minutes.

  • Remove sample plate from magnet plate.

  • Add 40 ul TE; pipette mix 10+ times. Incubate 2 minutes at RT.

  • Place sample plate back on magnet for 5 minutes or until all wells are cleared.

  • Transfer 40 ul to labeled transparent plate (Plate name_PCR_MIDs)

Normalize to 5 ng/ul

qPCR

Sequencing

Pool 2 parts TRNL with 2 parts fullITS and 1 part Baldwin CO1-Lark.

TRNL starting 2.77

FI starting 1.62

BALD starting 3.23

1 nM 1TYM_TRNL: 36 ul pool with 64 ul RSB

1 nM 1TYM_FI: 62 ul pool with 38 ul RSB

1 nM 1BALD_CO1: 31 ul pool with 69 ul RSB

Load Pool:

18 ul 1nM 1Bald

36 ul 1nM 1TYM_FI

36 ul 1nM 1TYM_TRNL

9 ul 1 nM PhiX

1 ul RSB