cd /project/microbiome/data_queue/seq/TRNL1/rawdata
dos2unix TRNL1_Demux.csv
unpigz --to-stdout /project/microbiome/data_queue/seq/TRNL1/rawdata/TRNL1_R1.fastq.gz | split -l 10000000 40000000 -d --suffix-length=3 --additional-suffix=.fastq - TRNL1_R1_ ;
unpigz --to-stdout /project/microbiome/data_queue/seq/TRNL1/rawdata/TRNL1_R2.fastq.gz | split -l 10000000 40000000 -d --suffix-length=3 --additional-suffix=.fastq - TRNL1_R2_
cd /gscratch/grandol1/TRNL1/rawdata/
/project/microbiome/data_queue/seq/TRNL1/rawdata/run_parse_count_onSplitInput.pl
...