CO1Lark Sequencing

Primer Source Paper

Primer bases:

LCO1490F (forward): GGTCAACAAATCATAAAGATATTGG

COI-CFMRa (reverse): GGWACTAATCAATTTCCAAATCC

95 °C for 60 s, 45 °C for 90 s, 72 °C for 90 s; 28 cycles of: 94 °C for 60 s, 50 °C for 90 s, 72 °C for 60 s

PCR MasterMix

ul/rxn

Reagent

# of rxns

ul needed

ul/rxn

Reagent

# of rxns

ul needed

3

5X Kapa HiFi Buffer

220

660

0.45

10M dNTPs

220

99

0.3

Kapa HiFi HotStart DNA Pol

220

66

7.25

HPLC H2O

220

1595

11

Total Volume

220

2420

  • Add 11 ul to each well of a hard shell, full skirt plate. Add 2 uL of 0.5 uM primers and 2uL of template to each well.

  • Primers:

 

Run CO1Lark plates on thermocycler program CO1Lark:

Step

Temp C

Cycles

Time

Step

Temp C

Cycles

Time

Denature

95

1X

10:00

Denature

94

35X

1:00

Annealing** (Row C)

50

35X

1:30

Extension/Elongation

72

35X

1:00

Final Extension

72

1X

10:00

Hold

4

1X

0:00

Run samples on TapeStation with D1000 kit:

 

page1image48924080

Positive Control Butterfly (D1):

page5image23562480

Extraction Blank(A2):

Typical Amplification (42/D2):

Worst Amplification (43/E2):

Best Amplification (46/H2):